A data management plan for this project was submitted to the Gordon and Betty Moore Foundation (GBMF) with the information below.

This page represents key information from a data management plan.

Moorea Biocode

Contributors to this project

• Brent Mishler: Investigation,University of California, Berkeley (UCB),https://orcid.org/0000-0001-5727-4916
• Chris Meyer: Investigation,National Museum of Natural History (mnhn.fr),https://orcid.org/0000-0003-2501-7952
• Claude Payri: Investigation,University of French Polynesia (upf.pf),https://orcid.org/0000-0002-0393-6811
• Craig Moritz: Investigation,University of California, Berkeley (UCB),https://orcid.org/0000-0001-5313-7279
• George Roderick: Investigation,University of California, Berkeley (UCB),https://orcid.org/0000-0001-7557-2415
• Gustav Paulay: Investigation,University of Florida (ufl.edu),https://orcid.org/0000-0003-4118-9797
• Jean-Yves Meyer: Investigation,Délégation à la Recherche, Government of French Polynesia,https://orcid.org/0000-0001-7968-9944
• John Deck: Data-curation,University of California, Berkeley (UCB),https://orcid.org/0000-0002-5905-1617
• Joyce Gross: Data-curation,University of California, Berkeley (UCB)
• Len Hirsch: Investigation,Smithsonian Institution (SI)
• Matteo Garbelotto: Investigation,University of California, Berkeley (UCB),https://orcid.org/0000-0001-9737-0128
• Neil Davies: Data-curation,  Investigation,University of California, Berkeley (UCB)
• Olivier Gargominy: Investigation,National Museum of Natural History (mnhn.fr),https://orcid.org/0000-0001-7807-944X
• Richard Pyle: Investigation,Bernice P. Bishop Museum (bishopmuseum.org),https://orcid.org/0000-0003-0768-1286
• Serge Planes: Investigation,Centre de Recherches Insulaires et Observatoire de l'Environnement (criobe.pf),https://orcid.org/0000-0002-5689-5371
• Sylvain Charlat: Investigation,University of Lyon System (lyon-university.org),https://orcid.org/0000-0003-0760-0087

Project details

• Project Start:November 22, 2007
• Project End:March 31, 2010
• Created:August 02, 2021
• Modified:September 13, 2021
• Ethical issues related to data that this DMP describes?: no

Citation

• When citing this DMP use:
  Neil Davies. (2021). "Moorea Biocode" [Data Management Plan]. DMPHub. https://doi.org/10.48321/D1F88S
• When connecting to this DMP to related project outputs (such as datasets) use the ID:
  https://doi.org/10.48321/D1F88S

Funding status and sources for this project

• Status:Granted
• Funder:Gordon and Betty Moore Foundation (GBMF)
• Funding opportunity number:GBMF1619
• Grant:https://www.moore.org/grant-detail?grantId=GBMF1619

Project description

The core goal of the Moorea Biocode Project (MBP) is to genetically barcode every non-microbial species on Moorea. We will thus create a professionally produced, verifiable (vouchered) All Taxa Biotic Inventory (ATBI) of Moorea (Output 1), together with the informatics services needed for ATBI and biocode-enabled research in Model Ecosystems (Outcome 2). We will also design a long-term plan (business model) to ensure the financial self-sustainability of biocode services, and carry out proof of concept studies to encourage broad-based support from funding agencies (Output 3).

Planned outputs

Dataset for: Moorea Biocode

• Format:Dataset
• Anticipated volume:unspecified
• Release timeline:Unknown
• Intended repository:
• License for reuse:unspecified

Other works associated with this research project

Articles

• Nitta, Joel H. 2008. “Exploring the Utility of Three Plastid Loci for Biocoding the Filmy Ferns (Hymenophyllaceae) of Moorea.” [Article]. TAXON 57 (3): 725–36. https://doi.org/10.1002/tax.573006.
• ANKER, ARTHUR. 2010. “Metabetaeus Borradaile, 1899 Revisited, with Description of a New Marine Species from French Polynesia (Crustacea: Decapoda: Alpheidae).” [Article]. Zootaxa 2552 (1): 37. https://doi.org/10.11646/zootaxa.2552.1.2.
• ANKER, ARTHUR. 2010. “New Findings of Rare or Little-Known Alpheid Shrimp Genera (Crustacea, Decapoda) in Moorea, French Polynesia.” [Article]. Zootaxa 2403 (1): 23. https://doi.org/10.11646/zootaxa.2403.1.3.
• ANKER, ARTHUR. 2010. “On Two Snapping Shrimps, Alpheus Baccheti n. Sp. and A. Coetivensis Couti\`eRe from the Tuamotu Islands, French Polynesia (Crustacea, Decapoda).” [Article]. Zootaxa 2492 (1): 49. https://doi.org/10.11646/zootaxa.2492.1.3.
• ANKER, ARTHUR. 2010. “The Mud-Shrimp Genus Axianassa Schmitt, 1924 (Crustacea, Decapoda, Axianassidae) in the Indo-West Pacific, with Description of a New Species from French Polynesia.” [Article]. Zootaxa 2557 (1): 49. https://doi.org/10.11646/zootaxa.2557.1.5.
• KOMAI, TOMOYUKI, and ARTHUR ANKER. 2010. “Two New Species of the Laomediid Genus Naushonia Kingsley, 1897 (Crustacea: Decapoda: Gebiidea) from the Indo-West Pacific.” [Article]. Zootaxa 2504 (1): 31. https://doi.org/10.11646/zootaxa.2504.1.3.
• Malay, Maria Celia (Machel) D., and Gustav Paulay. 2010. “PERIPATRIC SPECIATION DRIVES DIVERSIFICATION AND DISTRIBUTIONAL PATTERN OF REEF HERMIT CRABS (DECAPODA: DIOGENIDAE:$\Less$i$\Greater$CALCINUS$\Less$/i$\Greater$).” [Article]. Evolution 64 (3): 634–62. https://doi.org/10.1111/j.1558-5646.2009.00848.x.
• Plaisance, L., N. Knowlton, G. Paulay, and C. Meyer. 2009. “Reef-Associated Crustacean Fauna: Biodiversity Estimates Using Semi-Quantitative Sampling and DNA Barcoding.” [Article]. Coral Reefs 28 (4): 977–86. https://doi.org/10.1007/s00338-009-0543-3.
• Hubert, Nicolas, Erwan Delrieu-Trottin, Jean-Olivier Irisson, Christopher Meyer, and Serge Planes. 2010. “Identifying Coral Reef Fish Larvae through DNA Barcoding: A Test Case with the Families Acanthuridae and Holocentridae.” [Article]. Molecular Phylogenetics and Evolution 55 (3): 1195–1203. https://doi.org/10.1016/j.ympev.2010.02.023.
• COHEN, NICOLE J., JONATHAN R. DEEDS, EUGENE S. WONG, ROBERT H. HANNER, HAILE F. YANCY, KEVIN D. WHITE, TREVONNE M. THOMPSON, et al. 2009. “Public Health Response to Puffer Fish (Tetrodotoxin) Poisoning from Mislabeled Product.” [Article]. Journal of Food Protection 72 (4): 810–17. https://doi.org/10.4315/0362-028X-72.4.810.
• Check, Erika. 2006. “Treasure Island: Pinning down a Model Ecosystem.” [Article]. Nature 439 (7075): 378–79. https://doi.org/10.1038/439378a.
• Leray, M., J. T. Boehm, S. C. Mills, and C. P. Meyer. 2011. “Moorea BIOCODE Barcode Library as a Tool for Understanding Predator-Prey Interactions: Insights into the Diet of Common Predatory Coral Reef Fishes.” [Article]. Coral Reefs 31 (2): 383–88. https://doi.org/10.1007/s00338-011-0845-0.
• Deck, John, Michelle R. Gaither, Rodney Ewing, Christopher E. Bird, Neil Davies, Christopher Meyer, Cynthia Riginos, Robert J. Toonen, and Eric D. Crandall. 2017. “The Genomic Observatories Metadatabase (GeOMe): A New Repository for Field and Sampling Event Metadata Associated with Genetic Samples.” [Article]. PLOS Biology 15 (8): e2002925. https://doi.org/10.1371/journal.pbio.2002925.
• Biocode Project. 2013. “Moorea Biocode 2013 Dataset - Field Information Management System Data.” [Article]. University of California at Berkeley. https://doi.org/10.7286/V1154F0D.
• Biocode Project. 2013. “Moorea Biocode 2013 Dataset - Laboratory Information Management System Data.” [Article]. University of California at Berkeley. https://doi.org/10.7286/V1MW2F22.
• Biocode Project. 2013. “Moorea Biocode Laboratory Information Management System Trace and Gel Images.” [Article]. University of California at Berkeley. https://doi.org/10.7286/V1H41PBN.